Insertion junction: CLIP2.059479_3

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.059479
Chromosome:chromosome 8
Location:1392184
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g364200 (1 of 70) PF07282 - Putative transposase DNA-binding domain (OrfB_Zn_ribbon) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAGGTAGACGCTTGCGGCCTCAGACTGGATACGTGGCTCAGCCCAATTTC
Internal bar code:ATTTCCAGCTACCATATAGCAC

Confirmation - LEAP-Seq

LEAP-Seq distance:1419
LEAP-Seq percent confirming:61.5385
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:GCAGACATTCTGGGAAGGCT
Suggested primer 2:GTTCAGTCCAATTCGGGGGT