Insertion junction: CLIP2.059483_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.059483
Chromosome:chromosome 3
Location:2761992
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g161500 (1 of 1) PTHR23041:SF65 - E3 UBIQUITIN-PROTEIN LIGASE CCNB1IP1 HOMOLOG 3'UTR
Cre03.g161550 FAP55 (1 of 1) IPR009053//IPR023220 - Prefoldin // Type IV secretion system, VirB5-domain; Flagellar Associated Protein 55 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTCGGTATACCTGCAGGCAAGAGGCCTGATTCATGTAGCCCAAGCTGAC
Internal bar code:CGGCCAGTTCGCATTCACTGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:5331
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:56
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:56

Suggested primers for confirmation by PCR

Suggested primer 1:GAAAGTGCACCCAAGCTGTG
Suggested primer 2:TTGACCAGCACGTGCATACT