Insertion junction: CLIP2.059504_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.059504
Chromosome:chromosome 12
Location:2333018
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g508100 (1 of 2) PTHR21580//PTHR21580:SF21 - SHIPPO-1-RELATED // O(6)-METHYLGUANINE-INDUCED APOPTOSIS 2 3'UTR
Cre12.g508150 SRH21 (1 of 1) PTHR10799//PTHR10799:SF691 - SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED // MYB DOMAIN-CONTAINING PROTEIN-RELATED; SNF2-related DNA/RNA helicase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGCATGCGCCATGCGTGCTGTCTGTTGGCACACGTGTTCGCCTGTGCGGC
Internal bar code:ATTATTTATCACGCACACTGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:1233
LEAP-Seq percent confirming:96.5517
LEAP-Seq n confirming:28
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:ACCCGTGTCCATCAAGTTCC
Suggested primer 2:GCCAGTTGAGGAAGAGCAGT