Insertion junction: CLIP2.059512_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.059512
Chromosome:chromosome 3
Location:1673171
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g153050 RWP1 (1 of 1) IPR000104//IPR003035 - Antifreeze protein, type I // RWP-RK domain; RWP-RK transcription factor 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAGGGGGAGAGAGAAAGCGCTGCGGTCCAGGTGGCCTGGGGCCTGGGAGA
Internal bar code:TCTTACAGATGTGTCAACGTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1861
LEAP-Seq percent confirming:61.1111
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:GTAAGTCTTGACCAGGCGCT
Suggested primer 2:GTACAAAGCGCTGCACAACA