Insertion junction: CLIP2.059570_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.059570
Chromosome:chromosome 12
Location:2547324
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre12.g506900 (1 of 1) PTHR21568:SF0 - TRNA PSEUDOURIDINE SYNTHASE PUS10-RELATED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTATCAGCTCACCCCCAGCCCCCTGCACAGCTACCCTGCTCCCAGTCGCG
Internal bar code:TCAAGTTTTGGTTCTTACACGT

Confirmation - LEAP-Seq

LEAP-Seq distance:825
LEAP-Seq percent confirming:33.3333
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:3

Suggested primers for confirmation by PCR

Suggested primer 1:TGAAGCAAGCCTGTAAGCGA
Suggested primer 2:CACGGGTAGGGATATCGCAC