Insertion junction: CLIP2.059761_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.059761
Chromosome:chromosome 7
Location:1438035
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g323550 PUS8 (1 of 2) 5.4.99.19 - 16S rRNA pseudouridine(516) synthase / 16S RNA Psi(516) synthase; RNA pseudouridine synthase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTACGATGTTGGCTGTCGCAGGTGCAGTGTCGCAGGGGCGGCGGTGGCTG
Internal bar code:CTATGTGCCAATTCACGCAGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:2367
LEAP-Seq percent confirming:97.6471
LEAP-Seq n confirming:83
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:85

Suggested primers for confirmation by PCR

Suggested primer 1:GTGGCCAGATGTCAGGTTGA
Suggested primer 2:AGGAGACGGAAGAGGAGGAC