Insertion junction: CLIP2.059789_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.059789
Chromosome:chromosome 11
Location:1546534
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g468450 CEN1,VFL2,DLE2 20 kD Calcium-Binding Protein Centrin (caltractin); (1 of 1) K16465 - centrin-1 (CETN1) 3'UTR
Cre11.g468500 MPA8 Metallophosphoesterase/metallo-dependent phosphatase; (1 of 1) PTHR22953//PTHR22953:SF46 - ACID PHOSPHATASE RELATED // INACTIVE PURPLE ACID PHOSPHATASE 2-RELATED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGCCTAACAGGCGCTAACATGTAAATTTTATTCCCATCGGCAGCCTGCG
Internal bar code:TACCTCAGATCGTTTGTTTGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1296
LEAP-Seq percent confirming:98.4615
LEAP-Seq n confirming:64
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:65

Suggested primers for confirmation by PCR

Suggested primer 1:AGAACGAACACCCTGCTCTG
Suggested primer 2:CTGACTTGTCCACACGCTCT