Insertion junction: CLIP2.059846_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.059846
Chromosome:chromosome 17
Location:5747183
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g740850 (1 of 781) IPR000104 - Antifreeze protein, type I 5'UTR
Cre17.g740900 3'UTR_intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCCAGGCGATGAGACGGGCAGACGGCGGGCGAGTAGTGCTGTCCGATGCG
Internal bar code:AGGTTGTTCACTTTATTGTTGA

Confirmation - LEAP-Seq

LEAP-Seq distance:355
LEAP-Seq percent confirming:7.8125
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:59
LEAP-Seq n unique pos:64

Suggested primers for confirmation by PCR

Suggested primer 1:ACATGTCACACGTAGGCCTG
Suggested primer 2:CGCGCAATAGTACAACACGG