Insertion junction: CLIP2.059888_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.059888
Chromosome:chromosome 12
Location:5530311
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g530450 (1 of 4) IPR001841//IPR018957 - Zinc finger, RING-type // Zinc finger, C3HC4 RING-type outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTCCAACAGGAATACATGCAATCAACTTACGATGCTACGAAACAACAGCT
Internal bar code:AGCGTAGGCCTGCATCGGCGAT

Confirmation - LEAP-Seq

LEAP-Seq distance:3159
LEAP-Seq percent confirming:30.4878
LEAP-Seq n confirming:25
LEAP-Seq n nonconfirming:57
LEAP-Seq n unique pos:82

Suggested primers for confirmation by PCR

Suggested primer 1:CGGACCTGCTTTTTGTTGGG
Suggested primer 2:CTGAGTTGGACCAGGAGCAG