Insertion junction: CLIP2.059910_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.059910
Chromosome:chromosome 5
Location:955316
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g246900 (1 of 1) IPR008972//IPR028096 - Cupredoxin // EfeO-type cupredoxin-like domain 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGCAGGAGGCACGCACGCTAACCCCGAGAGTACCCCGGATGAATCTGATG
Internal bar code:TTATAAGCGGGGCTATCTAAGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1156
LEAP-Seq percent confirming:60.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:CCGTCGGATGCTGTCGATAA
Suggested primer 2:TTCCGCGGTGGTATTGTTGA