Insertion junction: CLIP2.059950_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.059950
Chromosome:chromosome 6
Location:8877814
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g311750 (1 of 21) IPR001611//IPR003591 - Leucine-rich repeat // Leucine-rich repeat, typical subtype 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AATGTCAAAAGTACTTATGGTTTTGGACTCTGTCAAAAAGCCGGTTTGAG
Internal bar code:TGTGCTCAGGATCGGGAAAAGC

Confirmation - LEAP-Seq

LEAP-Seq distance:780
LEAP-Seq percent confirming:91.3043
LEAP-Seq n confirming:21
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:CCAGTCTCAAATCATGCGCG
Suggested primer 2:GGGGTGTGGTAGTGAAGGTG