Insertion junction: CLIP2.059992_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.059992
Chromosome:plastome
Location:104009
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802310 2716997,rps3,ChreCp046 30S ribosomal protein S3; (1 of 1) PTHR11760//PTHR11760:SF19 - 30S/40S RIBOSOMAL PROTEIN S3 // 30S RIBOSOMAL PROTEIN S3, CHLOROPLASTIC CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGCAAGTATCAGATAATCTTAACGTAGCTGAAGGGGAAAACTCTACTAT
Internal bar code:TCTTGACTCAGCCTACTGGATG

Confirmation - LEAP-Seq

LEAP-Seq distance:366
LEAP-Seq percent confirming:25.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:ACGAGATGTTAAACGTGCTGT
Suggested primer 2:TTGCCGGGGATTTGTTAGCT