Insertion junction: CLIP2.060019_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.060019
Chromosome:chromosome 15
Location:1276906
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre15.g801727 NCL66 Nuclear Control of chloroplast-Like 66; (1 of 39) PF08373 - RAP domain (RAP) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACGGGTGGGACGCCACGCCAGCTGCCCTTACACATCCACCCATGGGGGC
Internal bar code:GAGTTATAAAACAGATTACGCA

Confirmation - LEAP-Seq

LEAP-Seq distance:2882
LEAP-Seq percent confirming:69.3878
LEAP-Seq n confirming:34
LEAP-Seq n nonconfirming:15
LEAP-Seq n unique pos:49

Suggested primers for confirmation by PCR

Suggested primer 1:AATGCAGACAGAGGTGGTGG
Suggested primer 2:TCGTCTGTGTCTGTGTCTGC