Insertion junction: CLIP2.060037_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.060037
Chromosome:chromosome 9
Location:866789
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g403500 (1 of 1) PF12796//PF13637//PF13920 - Ankyrin repeats (3 copies) (Ank_2) // Ankyrin repeats (many copies) (Ank_4) // Zinc finger, C3HC4 type (RING finger) (zf-C3HC4_3) 5'UTR_intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGCAGATTTGGCTGACTGATACCGAGAGGAGATCTAGTAAGAGCTGTTCG
Internal bar code:GCAGAAGCGGCGTGGCCGCCAG

Confirmation - LEAP-Seq

LEAP-Seq distance:4004
LEAP-Seq percent confirming:86.8687
LEAP-Seq n confirming:86
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:99

Suggested primers for confirmation by PCR

Suggested primer 1:GCCGTCAAGGGACATTCTCA
Suggested primer 2:GGGGGATAGTTGTAGTGCCG