Insertion junction: CLIP2.060113_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.060113
Chromosome:chromosome 5
Location:1253234
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre05.g241636 (1 of 1) PTHR23042:SF72 - TRANSCRIPTION FACTOR BHLH104-RELATED 5'UTR
Cre05.g241637 FAP32,IFT46 Intraflagellar transport protein 46; (1 of 1) PTHR13376//PTHR13376:SF0 - UNCHARACTERIZED // INTRAFLAGELLAR TRANSPORT PROTEIN 46 HOMOLOG 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCAATCGAGTCCGCAATCGGGATCCTTCCTGTAGAACTTGCTTATGAAA
Internal bar code:TGGAGTGGCAAGGAGCGCGGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:902
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:1

Suggested primers for confirmation by PCR

Suggested primer 1:GTCCGAGTCTGATAAGGCCG
Suggested primer 2:TCAAGTGTGTTCCTCGCCTC