Insertion junction: CLIP2.060115_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.060115
Chromosome:chromosome 16
Location:4435214
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g668150 (1 of 31) IPR003590 - Leucine-rich repeat, ribonuclease inhibitor subtype 3'UTR
Cre16.g668200 ING? (1 of 1) PF00628//PF12998 - PHD-finger (PHD) // Inhibitor of growth proteins N-terminal histone-binding (ING); PHD-type zinc-finger protein 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCATGACGTTATGTATGGCTAACAGGGGGATCATGGCTGCGACCTGCCAG
Internal bar code:ATGAGTTTAGAAGTTTAGGCAA

Confirmation - LEAP-Seq

LEAP-Seq distance:2435
LEAP-Seq percent confirming:95.6522
LEAP-Seq n confirming:22
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:CCGGTCATCCTTGTGTGTGA
Suggested primer 2:GGTCAAGTCGGGCAAGAAGA