Insertion junction: CLIP2.060141_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.060141
Chromosome:chromosome 9
Location:1584438
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g398900 CWP1,GP1 (1 of 80) IPR003882 - Pistil-specific extensin-like protein; Vegetative cell wall protein gp1 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTTCGATTAACCTCGCGCTGTAGCGAATGCCGTTCACGAGGAAGCCTGCA
Internal bar code:CAGTCACTGTGTTTTAGCCTTC

Confirmation - LEAP-Seq

LEAP-Seq distance:1091
LEAP-Seq percent confirming:62.5
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:GATGTCGACCAGTAGAGCGG
Suggested primer 2:GAGTGTTGGCGGGGAAGG