Insertion junction: CLIP2.060198_3

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.060198
Chromosome:chromosome 17
Location:2648018
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g716800 XUV7 Xanthine/uracil/vitamin C permease-like, sodium-dependent 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTATTCGTTGCGGTTGTTGATGTGTACGACATGACTTGTACACTAGTACA
Internal bar code:GGATTGCTCTGCTTGTGCTTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1607
LEAP-Seq percent confirming:55.7143
LEAP-Seq n confirming:39
LEAP-Seq n nonconfirming:31
LEAP-Seq n unique pos:70

Suggested primers for confirmation by PCR

Suggested primer 1:CTTCGGTTGTGCCTTTGTGG
Suggested primer 2:TGTTCCATGTCCGAGTCAGC