Insertion junction: CLIP2.060227_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.060227
Chromosome:chromosome 9
Location:5010418
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g405600 SFT1 (1 of 1) K08505 - protein transport protein SFT1 (SFT1); Intra-Golgi Qc-SNARE protein, Gs15/Sft1 family (Qc.II) 5'UTR
Cre09.g405650 (1 of 1) PTHR12794:SF0 - GEM-ASSOCIATED PROTEIN 2 outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCTGCCTGTCGCAATAGCCCCAGGCTCACTCGTCTTTGCTGCAAGTCTGG
Internal bar code:AATAGCTGACATCACGAACTTA

Confirmation - LEAP-Seq

LEAP-Seq distance:1135
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:GAACTGGATGGTTGAGGGGG
Suggested primer 2:TCTAGTTTGGGCCAACGGAC