Insertion junction: CLIP2.060235_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.060235
Chromosome:chromosome 12
Location:3444419
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g497450 FAP412 (1 of 21) IPR001611//IPR003591 - Leucine-rich repeat // Leucine-rich repeat, typical subtype; Flagellar Associated Protein 412 CDS
Cre12.g497500 SNE7 (1 of 8) PTHR10366:SF411 - HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173 PROTEIN; Cinnamoyl-CoA reductase/flavanone 4-reductase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTGCTCCCAGGGCGGCCGCTCCACATGCAGCTGCAGGCGTGCCTCCATG
Internal bar code:GCTTTCGAAACATAGGGCTTCG

Confirmation - LEAP-Seq

LEAP-Seq distance:1195
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:14

Suggested primers for confirmation by PCR

Suggested primer 1:GCCCAAGGTGGAATACGACA
Suggested primer 2:GCTGTGGGAATGGGAATGGA