Insertion junction: CLIP2.060265_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.060265
Chromosome:chromosome 7
Location:1442293
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g323550 PUS8 (1 of 2) 5.4.99.19 - 16S rRNA pseudouridine(516) synthase / 16S RNA Psi(516) synthase; RNA pseudouridine synthase 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGCACATAACGTAGGCTGATAGTGAAACGCAAATGAACTAAGATACAAA
Internal bar code:GCCATTTCATTTGAGTACTGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:1875
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:ATGTCCTGTGTCGCTTTCGT
Suggested primer 2:GCCGTCCTCATCATCATCGT