Insertion junction: CLIP2.060276_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.060276
Chromosome:chromosome 9
Location:1012127
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g402402 (1 of 80) IPR003882 - Pistil-specific extensin-like protein 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGTTATGGCCATACCAACTGCCTTCCAGTTCCGGACCTGGGCATGTGAG
Internal bar code:TTCCAAACCTTTTTACTCGGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:395
LEAP-Seq percent confirming:63.6364
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:TCGACCTCAACGTCACACTG
Suggested primer 2:CCGTGTTTCAAAGTGGCTGG