Insertion junction: CLIP2.060287_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.060287
Chromosome:chromosome 6
Location:3127977
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g275500 (1 of 4) IPR000104//IPR001471//IPR016177 - Antifreeze protein, type I // AP2/ERF domain // DNA-binding domain 5'UTR_intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTCGTGGCGGCGGCCCGGATGCACACTGCCTTTGGTTCATGGTGTATTGC
Internal bar code:CGTTATTGAATGCAATCCTAGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1002
LEAP-Seq percent confirming:94.4444
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:CTGTGTTGCTGGTGAAAGGC
Suggested primer 2:GGGAGATATGAGCGAGTGCC