Insertion junction: CLIP2.060305_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.060305
Chromosome:chromosome 2
Location:4982087
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g110600 DEG5 (1 of 2) PTHR22939:SF99 - PROTEASE DO-LIKE 8, CHLOROPLASTIC; Deg protease 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGGGAAGCAACTCCTTAAGCTCATAAAGTATTGGTCAGCCATGAGCTGAT
Internal bar code:TAGCCGTGTAGGTTATCAGGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:4840
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:56
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:56

Suggested primers for confirmation by PCR

Suggested primer 1:ACGCGACAAGACTGCTGTTA
Suggested primer 2:CCCACACGATACCGGATCTG