Insertion junction: CLIP2.060333_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.060333
Chromosome:chromosome 6
Location:5734686
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g288450 (1 of 1) PTHR14155//PTHR14155:SF102 - RING FINGER DOMAIN-CONTAINING // RING ZINC FINGER-CONTAINING PROTEIN 3'UTR
Cre06.g288500 RRA2 (1 of 3) PTHR10994//PTHR10994:SF3 - RETICULON // ARABINOSYLTRANSFERASE; Reduced residual arabinose 2 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAAACATCCACCTCATCAGCAGCTTAGCATAGCAAACAATCAACGTTATC
Internal bar code:GGGTATGGGGTCTCTGGCGATA

Confirmation - LEAP-Seq

LEAP-Seq distance:1426
LEAP-Seq percent confirming:96.4286
LEAP-Seq n confirming:27
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:28

Suggested primers for confirmation by PCR

Suggested primer 1:CACGCCCCAATTTTTCCCAG
Suggested primer 2:GCGGGCATGTACTCGTGATA