Insertion junction: CLIP2.060346_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.060346
Chromosome:plastome
Location:27264
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802276 ChreCp014,2717057,rpl16 (1 of 1) PTHR12220//PTHR12220:SF14 - 50S/60S RIBOSOMAL PROTEIN L16 // SUBFAMILY NOT NAMED; 50S ribosomal protein L16 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAAGTATTGTTTCGCTTTGGCTCAAAAGCCAATACTAAAGTATATATTAC
Internal bar code:ATGTGGGTACCTGATGTGAGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:110
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:TGCCACCAAGAGCACGAATA
Suggested primer 2:GCCGGACGTCGTGTTTTAAC