Insertion junction: CLIP2.060351_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.060351
Chromosome:chromosome 2
Location:4378104
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g105450 CGL141 (1 of 1) PTHR36749:SF1 - F7O18.3 PROTEIN; Conserved in the Green Lineage 3'UTR
Cre02.g105500 AOD1 Acetylornithine deacetylase; (1 of 1) 3.5.1.16 - Acetylornithine deacetylase / N-acetylornithinase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTAACCCACCCTTTTAAGAGCCAAGGTAAGAGCCCAGCAAGGCAGCAAC
Internal bar code:TTTTTCGTCGAGGTGCCTGCGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1078
LEAP-Seq percent confirming:76.4706
LEAP-Seq n confirming:13
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:GAACTGGGCTCCATTGTGGA
Suggested primer 2:CGACAAGGAGCAGAACAGGT