Insertion junction: CLIP2.060407_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.060407
Chromosome:plastome
Location:168185
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802324 tic214,orf1995,ycf1,2717035,ChreCp059 Forms with TIC20, TIC56 and TIC100 the 1-MD complex mediating chlorolast protein import 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GACAAAGTAAATGGATTTTGGAAAAGGAAAAAAGATGTTAGTGGCTGTTG
Internal bar code:TTACGGAAGGCTAATAGGTCTA

Confirmation - LEAP-Seq

LEAP-Seq distance:257
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:GGTACCGCTACTAACTCGCC
Suggested primer 2:GTCTCCTTCGATGCCTCTGG