Insertion junction: CLIP2.060419_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.060419
Chromosome:chromosome 16
Location:2355115
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g659150 (1 of 7) PF00076//PF14259 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACACATCGGGTCACGCCACCTACAAGGTCCTTACAAGAGCCCCGTTTCA
Internal bar code:GTCGGCAAGGCTTTATTGTACA

Confirmation - LEAP-Seq

LEAP-Seq distance:1336
LEAP-Seq percent confirming:96.0
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:25

Suggested primers for confirmation by PCR

Suggested primer 1:CAGCCCACTCTTCCTTGAGG
Suggested primer 2:GGCGTACGCTGTTTATGCTG