Insertion junction: CLIP2.060484_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.060484
Chromosome:plastome
Location:91348
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802302 pafII,ycf4 photosystem I assembly factor II; (1 of 1) PF02392 - Ycf4 (Ycf4) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGCAAAAGAGAAATTCCTTTAACTGGTATTGGTCAACCATTAACATTAAA
Internal bar code:GCGTACTAGGTGCGGCTAACCT

Confirmation - LEAP-Seq

LEAP-Seq distance:544
LEAP-Seq percent confirming:19.2308
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:21
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:GCTTGTGCTGACATGCCATT
Suggested primer 2:CGTTCATTGCCGTCCTTTGG