Insertion junction: CLIP2.060524_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.060524
Chromosome:chromosome 2
Location:3998453
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g102750 (1 of 2) PTHR31646:SF1 - ALPHA-1,2-MANNOSYLTRANSFERASE MNN2 3'UTR
Cre02.g102776 (1 of 781) IPR000104 - Antifreeze protein, type I 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAGGGACCTTTTGGCATTGCTGTCTGTTGCTGTTACGGTCGTTCATCGTT
Internal bar code:CGAGCCTGCGGTTTTGGTATGT

Confirmation - LEAP-Seq

LEAP-Seq distance:473
LEAP-Seq percent confirming:95.4545
LEAP-Seq n confirming:21
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:22

Suggested primers for confirmation by PCR

Suggested primer 1:GCGGATTGGAACACAGAGGA
Suggested primer 2:CCATTAAGCTCGCATGGTGC