Insertion junction: CLIP2.060562_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.060562
Chromosome:chromosome 16
Location:548306
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g692500 (1 of 19) PTHR31251:SF1 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 10-RELATED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGTACTGCCTGCCAGCTGCGCTCGGCTGCATGTGGTCCGGTTGTCGTCCT
Internal bar code:TGTTTGTTTGGGAATATCACAT

Confirmation - LEAP-Seq

LEAP-Seq distance:5101
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:93
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:93

Suggested primers for confirmation by PCR

Suggested primer 1:ACATGCTGCTCAGTCTGGAC
Suggested primer 2:CCTTCTTCCATCCCGCCTTT