Insertion junction: CLIP2.060606_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.060606
Chromosome:chromosome 3
Location:9090177
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre03.g201552 MMP8 Metalloproteinase of VMP family; (1 of 1) IPR003882//IPR008752//IPR013320 - Pistil-specific extensin-like protein // Peptidase M11, gametolysin // Concanavalin A-like lectin/glucanase domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGCAAATCCGCGGCAGCGAGGTGGATAGCAGGCAACACGGCCGCGTGTGA
Internal bar code:ACGGAGTAGTAGAGGTGTAATT

Confirmation - LEAP-Seq

LEAP-Seq distance:463
LEAP-Seq percent confirming:25.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:CTAGTTCTGCGGGGGTGTTT
Suggested primer 2:TCAACACAAGCAATGCGACG