Insertion junction: CLIP2.060669_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.060669
Chromosome:chromosome 12
Location:7358399
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g557800 (1 of 1) K06875 - programmed cell death protein 5 (PDCD5, TFAR19) outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTATGCATGCTCGTGGTTTCCGCGAGGGCTTGGAACAGGCTGCCAGTCAG
Internal bar code:GATGACCTGATAGGAATTTTTT

Confirmation - LEAP-Seq

LEAP-Seq distance:1748
LEAP-Seq percent confirming:88.8889
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:GCGCAAGGGTAGGATAGCTT
Suggested primer 2:CGAAAGGATGCGGCAAGATG