Insertion junction: CLIP2.060695_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.060695
Chromosome:chromosome 1
Location:4945181
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g034300 (1 of 1) PF09073 - BUD22 (BUD22) 3'UTR_intron
Cre01.g034350 (1 of 2) PTHR10641//PTHR10641:SF585 - MYB-LIKE DNA-BINDING PROTEIN MYB // MYB DNA-BINDING-LIKE PROTEIN 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTGCTTAGTAGTGAGGGGCGGCGGCACGGCACGGCCGCAGCTCACATGA
Internal bar code:TTCGTTTTGGCCACGTAGCTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:644
LEAP-Seq percent confirming:89.4737
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:GACCAACCGCCATTTTGCTT
Suggested primer 2:ATGGTGCGTAGTTCGTGTGT