Insertion junction: CLIP2.060753_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.060753
Chromosome:chromosome 6
Location:7382518
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g300100 PIA1,PIG-L (1 of 1) 3.5.1.89 - N-acetylglucosaminylphosphatidylinositol deacetylase / N-acetylglucosaminylphosphatidylinositol de-N-acetylase; N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein 3'UTR
Cre06.g300139 (1 of 7) IPR010995 - DNA repair Rad51/transcription factor NusA, alpha-helical outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAGGTGTGAGAACCTGGCAAGGGGCACAACCCAAAATAGCTTTGGTTCTC
Internal bar code:GGACAAGCACCTAAACTCCATT

Confirmation - LEAP-Seq

LEAP-Seq distance:2170
LEAP-Seq percent confirming:96.5517
LEAP-Seq n confirming:28
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:TGTATGTGCGCCTGTGATGT
Suggested primer 2:TGCTACGGGTGAGGACCATA