Insertion junction: CLIP2.060823_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.060823
Chromosome:chromosome 12
Location:3424962
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g497700 SNE8 (1 of 8) PTHR10366:SF411 - HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173 PROTEIN; Cinnamoyl-CoA reductase/flavanone 4-reductase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGCGCGGACAGGCGCCGGGCGTGTGGGCCACAGGGTCTCTGATAGCTGA
Internal bar code:TCCAAAAGCAGAAAGTATGAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:603
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:TACGTGGTGCTCAGTGTTCC
Suggested primer 2:CTTGCTGAGGTTCGGGTCTT