Insertion junction: CLIP2.060871_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.060871
Chromosome:chromosome 12
Location:3990861
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g515850 PCN1 (1 of 1) K04802 - proliferating cell nuclear antigen (PCNA); Proliferating cell nuclear antigen homolog 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTTCTCCACCTCTTGAACTAAGGACACGAAATGTTAGGGTGTTGCGGATG
Internal bar code:ACGTGGGACAAGCAGATTTTAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1366
LEAP-Seq percent confirming:96.875
LEAP-Seq n confirming:31
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:32

Suggested primers for confirmation by PCR

Suggested primer 1:CCACCACAGTCAGCCATGAT
Suggested primer 2:AGGTGGGGATATGGGCTTCT