Insertion junction: CLIP2.060915_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.060915
Chromosome:chromosome 4
Location:1607347
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g213150 MAE13 MATE efflux family protein; (1 of 5) PTHR11206//PTHR11206:SF94 - MULTIDRUG RESISTANCE PROTEIN // DNA-DAMAGE-INDUCIBLE PROTEIN F 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAAACCACAAGTAGCCGCTGACCCAAACCAATTTTGGCTGCAAAACTGCC
Internal bar code:GGTTGTCTGCATACCAGTACCT

Confirmation - LEAP-Seq

LEAP-Seq distance:1224
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:CATTAGCATTTCCGGGTGCG
Suggested primer 2:TTGTGGGCAGGATGTAGCAG