Insertion junction: CLIP2.060918_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.060918
Chromosome:chromosome 11
Location:942270
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g467658 (1 of 781) IPR000104 - Antifreeze protein, type I outside_mRNA
Cre11.g467659 (1 of 1) K15128 - mediator of RNA polymerase II transcription subunit 6 (MED6) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAACGCGCAAGGGGTGAAAGCAAGAGGTTGACTTCGTGCGTGCGGTCATA
Internal bar code:GTTATTTTTTAATTGAGGCTTT

Confirmation - LEAP-Seq

LEAP-Seq distance:3009
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:43
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:43

Suggested primers for confirmation by PCR

Suggested primer 1:CTGTTGAGGCTGCTACTGCT
Suggested primer 2:CCGTGGATCTGGAATCTCCG