Insertion junction: CLIP2.060949_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.060949
Chromosome:chromosome 1
Location:5489923
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g038850 (1 of 1) PTHR24012//PTHR24012:SF308 - FAMILY NOT NAMED // PROTEIN Y55F3AM.3, ISOFORM A 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCCTCCTGCACAGGTTAGGGCTCTGGAGGGTGCGGGAGTCCAGAGTCTGC
Internal bar code:TTTCGAGACTCGCGATGATCTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1479
LEAP-Seq percent confirming:33.3333
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:16
LEAP-Seq n unique pos:24

Suggested primers for confirmation by PCR

Suggested primer 1:ATTGCGTGGCTGGGAAGTAA
Suggested primer 2:CTGGAGATCTGCTACTGCGG