Insertion junction: CLIP2.060951_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.060951
Chromosome:chromosome 12
Location:3429641
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g497650 THY28 Predicted protein; (1 of 1) PF01878 - EVE domain (EVE) 3'UTR
Cre12.g497652 (1 of 8) PTHR10366//PTHR10366:SF411 - NAD DEPENDENT EPIMERASE/DEHYDRATASE // HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173 PROTEIN 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AATCCATAAGTATCTGCAAAACTTTAAGTGTAAGCACGTGAACTGAGCAA
Internal bar code:GGACTCAGTTCTCATCAGCAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1815
LEAP-Seq percent confirming:95.8333
LEAP-Seq n confirming:23
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:24

Suggested primers for confirmation by PCR

Suggested primer 1:ATTACACCCTCCCTCCCCTC
Suggested primer 2:AATACTACGACGAGCGCAGG