Insertion junction: CLIP2.061106_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.061106
Chromosome:chromosome 16
Location:546154
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g692500 (1 of 19) PTHR31251:SF1 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 10-RELATED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCTACACAGGTGCTGCGTGTCTCCTGCGGCCTACAACGCCCGTCCTTGC
Internal bar code:TAGGAACTTGTCCCGTCTCCGC

Confirmation - LEAP-Seq

LEAP-Seq distance:5971
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:130
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:130

Suggested primers for confirmation by PCR

Suggested primer 1:GGTGTATCGTGCGTACCGAT
Suggested primer 2:TGGGAACTGGGCTAGATCGA