Insertion junction: CLIP2.061123_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.061123
Chromosome:chromosome 6
Location:4753250
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g279500 CPL6 Conserved in the Plant Lineage; (1 of 1) PTHR15852:SF8 - CHAPERONE PROTEIN DNAJ-LIKE PROTEIN 3'UTR
Cre06.g279550 (1 of 62) PF00226 - DnaJ domain (DnaJ) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCGCGTAACGCTATGAAGGTCGGCAGTCAACCAGGGGGTGGGTGTTTCTC
Internal bar code:TTAAACTTCGTGTCTGGGTCAT

Confirmation - LEAP-Seq

LEAP-Seq distance:950
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:1

Suggested primers for confirmation by PCR

Suggested primer 1:CATTCAGTTGTGGCTGTGGC
Suggested primer 2:TAGCGCGTGGTTTGCTCTTA