Insertion junction: CLIP2.061168_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.061168
Chromosome:chromosome 6
Location:4397202
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre06.g800677 (1 of 352) PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGTACACCTCGTATGGGACCCCGTCCGACCCAGGCGCTTTACCATTGGC
Internal bar code:TATGATACCGTTGGGAGTTAGT

Confirmation - LEAP-Seq

LEAP-Seq distance:2370
LEAP-Seq percent confirming:18.4615
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:53
LEAP-Seq n unique pos:65

Suggested primers for confirmation by PCR

Suggested primer 1:AAATCCCGTGGCCAGTACAG
Suggested primer 2:TCGATCAGGCCTTGGAGGTA