Insertion junction: CLIP2.061201_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.061201
Chromosome:chromosome 3
Location:2657980
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g160700 (1 of 2) IPR000679//IPR013088 - Zinc finger, GATA-type // Zinc finger, NHR/GATA-type 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCAAGAGTCCAAGTCGGCCAGGCTTAAGGTCGCTTCAAGCTACCTTGCA
Internal bar code:AGGGACGGCTGCGGGTGATCCA

Confirmation - LEAP-Seq

LEAP-Seq distance:5265
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:108
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:108

Suggested primers for confirmation by PCR

Suggested primer 1:CGGCGCTCTAGTAAGGAAGG
Suggested primer 2:TAGGGCTGCAGACTGGAGAT