Insertion junction: CLIP2.061206_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.061206
Chromosome:chromosome 5
Location:362951
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre05.g243472 (1 of 2) IPR013321 - Arc-type ribbon-helix-helix 5'UTR_intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGACGAAACTGAAAACCGCACGACGCATAAAGACGAAGATATCGCTTTTG
Internal bar code:TTCAGACACCTAATAACCCTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:4228
LEAP-Seq percent confirming:38.8889
LEAP-Seq n confirming:21
LEAP-Seq n nonconfirming:33
LEAP-Seq n unique pos:54

Suggested primers for confirmation by PCR

Suggested primer 1:GCCGGGTATGGGGTGTTTTA
Suggested primer 2:CTGGGACATATCAGACCGGC