Insertion junction: CLIP2.061244_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.061244
Chromosome:chromosome 12
Location:5145336
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g526650 (1 of 8) IPR000719//IPR002290//IPR011009//IPR020635//IPR020636 - Protein kinase domain // Serine/threonine/dual specificity protein kinase, catalytic domain // Protein kinase-like domain // Tyrosine-protein kinase, catalytic domain // Calcium/calmodulin-dependent/calcium-dependent protein kinase 3'UTR
Cre12.g526700 RBL9 Rhomboid-like protease; (1 of 11) 3.4.21.105 - Rhomboid protease 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGAAGCCTGCTGCCAGATCCATGCCAAACGACACGCTCTCCAAATACCC
Internal bar code:AGAACTCTTTTCTTGCTAGTAT

Confirmation - LEAP-Seq

LEAP-Seq distance:3400
LEAP-Seq percent confirming:77.0492
LEAP-Seq n confirming:47
LEAP-Seq n nonconfirming:14
LEAP-Seq n unique pos:61

Suggested primers for confirmation by PCR

Suggested primer 1:AGGTGACGGGTTGCAAGTAG
Suggested primer 2:CAGGCACGCACAATTGAACA