Insertion junction: CLIP2.061310_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.061310
Chromosome:chromosome 12
Location:8793533
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g547000 (1 of 1) IPR003442//IPR027417 - tRNA threonylcarbamoyl adenosine modification protein TsaE // P-loop containing nucleoside triphosphate hydrolase 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGCCTTTCTGCGTAGAACCCTTTCCTCGCAACGCCCACGATGGAGACGC
Internal bar code:GATAGCAAAAAAGCACGATCGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1130
LEAP-Seq percent confirming:87.5
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:CACCGGCAGAAAGTCATCCT
Suggested primer 2:ATCGACGTCTTGGTGCAAGT