Insertion junction: CLIP2.061475_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.061475
Chromosome:chromosome 8
Location:2053996
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g368950 SHK2, DHQS,DQS1,DHQS,DHQS1 (1 of 1) 4.2.3.4 - 3-dehydroquinate synthase / Dehydroquinate synthase; 3-dehydroquinate synthase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AACAAGTCGCGAGCCTCATTCAGCCTCGGAGCGTGCGTGCCCTGCCCTGC
Internal bar code:AGGCGGACACCAGCGCGCGCGC

Confirmation - LEAP-Seq

LEAP-Seq distance:727
LEAP-Seq percent confirming:90.4762
LEAP-Seq n confirming:19
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:21

Suggested primers for confirmation by PCR

Suggested primer 1:ATGACCACTGAGCAGTTCCG
Suggested primer 2:ATCACCTGCCAACATCCCAG